Notebooks

Notebook examples are kept in the repository so users can inspect and execute real SBOL workflows.

Recommended starting points

notebooks/buildcompiler_offline_quickstart.ipynb

Offline SBOL collection loading, level-1 assembly, level-2 assembly, domestication, and full-build examples.

notebooks/buildcompiler_transformation_quickstart.ipynb

Offline level-1 assembly followed by BuildCompiler transformation and the complete PUDU assembly/transformation/plating simulation chain.

notebooks/full_build_workflow_examples.ipynb

Full-build artifact packaging examples.

Notebook result directories

Generated outputs are stored under notebooks/results. The most useful directory for automation integration is:

notebooks/results/buildcompiler_transformation_quickstart/

It contains generated PUDU protocol scripts, simulator logs, intermediate JSON handoff files, and the final plating layout.